So im running Ubuntu 16.10 and I have a windows partition on my second drive from back when I was on windows that I want to access on Linux. The issue is it does not show up, and if I go into the disks app, it shows the partition is unknown, and when I go to Gparted, it says that it is unable to detect file system. Any ideas?
If it's a Windows 8 or 10 boot partition, be aware that Windows normally "hibernates" (suspends to disk) disk rather than fully shutting down. This can dramatically reduce the Windows boot time, because it basically does a resume from disk instead of a full boot.
However, it means it's unsafe for other operating systems to mount the NTFS filesystem while Windows is suspended. Recent NTFS utilities for Linux will refuse to mount a suspended NTFS.
If this is the problem, you'll have to boot into Windows and disable fast boot/suspend to disk and then shutdown. I've done this before, but can't remember the exact steps. Google will tell you...
When I install Slackware it recognises windows partitions and asks me if I want to be able read/write to the windows partitions. I actually have to set that up ... I would assume it is the same for all linux distros... but you know what happens when we assume.